2022
Kaya, G., C. Ezekannagha, D. Heider, G. Hattab (2022):
Context-Aware Phylogenetic Trees for Phylogeny-Based Taxonomy Visualization.
frontiers in Genetics.
DOI: doi.org/10.3389/fgene.2022.891240
Anžel, A., D. Heider, G. Hattab (2022):
MOVIS: A multi-omics software solution for multi-modal time-series clustering, embedding, and visualizing tasks.
Computational and Structural Biotechnology Journal, Volume 20, 2022.
DOI: doi.org/10.1016/j.csbj.2022.02.012.
El-Shaikh, A., M. Welzel, D. Heider, B. Seeger (2022):
High-scale random access on DNA storage systems.
NAR Genomics and Bioinformatics, Volume 4, Issue 1, March 2022, Oxford University Press.
DOI: doi.org/10.1093/nargab/lqab126.
2021
Löchel, H. F., M. Welzel, G. Hattab, A.-C. Hauschild, D. Heider (2021):
Fractal construction of constrained code words for DNA storage systems.
Nucleic Acids Research, Oxford University Press.
DOI: https://doi.org/10.1093/nar/gkab1209.
Nier, S., S. Ringelband, S. Dehnen (2021):
Selective Replacement of Organosilicon Units in the Cluster [(PhSi)4S6] with Coinage Metal Complex Fragments.
Chemical Communications 2021, 57.
DOI: 10.1039/D1CC04264E.
Anžel, A., D. Heider, G. Hattab (2021):
The Visual Story of Data Storage: From Storage Properties to User Interfaces.
Computational and Structural Biotechnology Journal.
DOI: 10.1016/j.csbj.2021.08.031.
Schwarz, P. M., B. Freisleben (2021):
NOREC4DNA: using near-optimal rateless erasure codes for DNA storage.
BMC Bioinformatics 22, 406.
DOI: 10.1186/s12859-021-04318-x.
Hattab, G., T. M. Rhyne, D. Heider (2021).
Correction: Ten simple rules to colorize biological data visualization.
PLoS Computational Biology, 17(4), e1008901.
DOI: 10.1371/journal.pcbi.1008901.
Hernández-Tamayo R., H. Schmitz, P. L. Graumann (2021).
Single-Molecule Dynamics at a Bacterial Replication Fork after Nutritional Downshift or Chemically Induced Block in Replication.
mSphere 27;6(1), e00948-20.
DOI: 10.1128/mSphere.00948-20.
2020
Hattab, G., T.M. Rhyne, D. Heider (2020):Ten simple rules to colorize biological data visualization.
PLOS Computational Biology.
DOI: 10.1371/journal.pcbi.1008259.
Korfhage, N., M. Mühling, S. Ringshandl, A. Becker, B. Schmeck, B. Freisleben (2020):
Detection and segmentation of morphologically complex eukaryotic cells in fluorescence microscopy images via feature pyramid fusion.
PLOS Computational Biology 16: e1008179.
DOI: 10.1371/journal.pcbi.1008179.
Schwarz, M., M. Welzel, T. Kabdullayeva, A. Becker, B. Freisleben, D. Heider (2020):
MESA: Automated assessment of synthetic DNA fragments and simulation of DNA synthesis, storage, sequencing, and PCR errors.
Bioinformatics 36: 3322-3326.
DOI: 10.1093/bioinformatics/btaa140.
Welzel, M., A. Lange, D. Heider, M. Schwarz, B. Freisleben, M. Jensen, J. Boenigk, D. Beisse (2020):
Natrix: A snakemake-based workflow for processing, clustering, and taxonomically assigning amplicon sequencing reads.
BMC Bioinformatics 21: 526.
DOI: 10.1186/s12859-020-03852-4.
Software
DNASmart from Chisom.MOVIS from Aleksandar Anžel.
MESA: MOSLA Error Simulator. From Marius Welzel & Michael Schwarz. More information.